| Season | Team | Competition | MP | G | A | Rating | ||
|---|---|---|---|---|---|---|---|---|
| 2024 | Atlético Nacional | Primera A | 10 | 1 | 0 | 2 | 0 | 6.9 |
| 2023 | Atlético Nacional | Primera A | 45 | 10 | 2 | 5 | 0 | 6.8 |
| 2022 | Atlético Nacional | Primera A | 43 | 19 | 3 | 3 | 0 | 6.9 |
| 2021 | Atlético Nacional | Primera A | 41 | 21 | 6 | 7 | 0 | 7.0 |
| 2020 | Atlético Nacional | Primera A | 15 | 9 | 0 | 0 | 1 | 7.0 |
| 2019 | Independiente Santa Fe | Primera A | 23 | 6 | 3 | 5 | 0 | 6.9 |
| 2018/2019 | Atlas | Liga MX | 24 | 6 | 0 | 1 | 0 | 6.8 |
| 2017/2018 | Atlético Morelia | Liga MX | 4 | 0 | 0 | 0 | 0 | 6.5 |
| 2017 | Deportivo Cali | Primera A | 40 | 16 | 2 | 2 | 0 | 6.9 |
| 2016/2017 | Atlas | Liga MX | 12 | 0 | 0 | 0 | 0 | 6.7 |
| 2015/2016 | Atlas | Liga MX | 11 | 5 | 0 | 1 | 0 | 6.8 |
| 2015 | Atlético Nacional | Primera A | 36 | 18 | 0 | 4 | 0 | – |
| 2014 | Atlético Nacional | Primera A | 13 | 3 | 0 | 1 | 0 | – |
| 2013 | Atlético Nacional | Primera A | 28 | 11 | 0 | 1 | 0 | – |
| 2012 | Atlético Nacional | Primera A | 3 | 2 | 0 | 0 | 0 | – |
| 2012 | Leones | Primera B | 21 | 20 | 0 | 2 | 0 | – |
| 2011 | Leones | Primera B | 23 | 11 | 0 | 3 | 0 | – |
| Total | 392 | 158 | 16 | 37 | 1 | – | ||
| Date | From | To | Type | |
|---|---|---|---|---|
| - | Santa Fe | Atl. Nacional | N/A | |
| 07 Jan 2019 | Atlas | Santa Fe | N/A | |
| 07 Jan 2018 | Morelia | Atlas | N/A | |
| 01 Feb 2018 | Atlas | Morelia | Loan | |
| 01 Jan 2017 | Atlas | Cali | Loan | |
| - | Atl. Nacional | Atlas | N/A | |
| 07 Jan 2012 | Leones | Atl. Nacional | N/A |
Jefferson Duque career history shows progression across clubs and competitions, including club timeline, national team appearances and overall career totals.